Date Received: 02-11-2017 / Date Accepted: 28-11-2017
Circoviruses has been detected in diverse animal species, including sus scrofa. To date, only PCV2 is demonstrated as a causalagent of porcine circovirus associated diseases. In 2015, a novel circovirus (Porcine circovirus 3, PCV3) was detected for the first time from pigs suffered from porcine dermatitis and nephropathy syndrome and reproductive failure. Since then, PCV3 has been reported in several pig producing countries. This study was carriedout to investigate the presence and the prevalence of PCV3 in the pig populations in northern Vietnam. The PCR screening detected the presence of PCV3 in 6 out of 135 samples (4.44%) collected from7 Northern provinces in 2011 and 2016-2017and fivestrains were successfully sequenced. The capsid coding gene (ORF2) of 5 strains were 642 bases in length, containing39 point nucleotide mutations and 9 mutations were non-synonymous. The phylogenetic analysis on the basisof ORF2 gene suggested that 5 Vietnamese PCV3 strains belonged to PCV3bgenetic cluster, of which, 4 out of 5 strains were clustered closely with Chinese PCV3 strains.