Additional Files
Date Received: 26-02-2025
Date Published: 26-02-2025
##submissions.doi##: https://doi.org/10.1234/z77jv460
Views
Downloads
How to Cite:
Characteristics of Colistin and Other Important Antibiotics Resistance Genes of Escherichia coli Isolated from Pig and Farm-Workers in Soc Son, Ha Noi
Keywords
E. coli, antibiotic resistance, colistin, resistant-genes, pig
Abstract
Antibiotic-resistant bacteria and the circulation of drug-resistant genes are a threat to public health globally. Research results show that the rate of detected of colistin ressitant E. coli from pigs in small- scale pig farm in Soc Son - Hanoi was 72% (36/50 farms) and from farm-workers was 16% (8/50 farms). Of these, 10 E. coli strains from 05 farms were selected for analyzing their genomic sequences by Oxford Nanopore Technologies (ONT) systerm (one strain from pig and one strain from farm-worker each of five farms). The studied results showed that 38 resistance genes (14 genes located on chromosome và 31 genes located on plasmids) with 9 antibiotic group. 10 strains were determined to carry to 7-22 resistance genes simultaneously. E. coli strains carried resistance genes of β-lactams, colistin, tetracycline, sulfonamide, quinolon, phenicol, aminoglycoside, marcolide, trimethoprim. The mcr-1 and/or mcr-3 were found in 10 E. coli strains carrying colistin-resistance phenotype. One strain isolated from farmer and 3 strains isolated from pigs carried 2 mcr-1 and mcr-3 simultaneously. One E. coli strain (barcode 60 - PCE 20.1) was detected from pigs and another (barcode 67- PCE 31.1) was isolated from farm-workers were of the same resistance gen characteristic eventhought they were detected from two diffirent farms.
References
Barlaam A., Parisi A., Spinelli E., Caruso M., Taranto P. DI. and Normanno G. (2019). Global emergence of colistin-resistant Escherichia coli in food chains and associated food safety implications: a review. J Food Prot. 2019 Aug. 82(8):1440-1448. doi: 10.4315/0362-028X.JFP-19-116.
Blattner F.R., Plunkett G., Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B. & Shao Y. (1997). The complete genome sequence of Escherichia coli K-12.
Science. 277(5331):1453-62. doi: 10.1126/science.277.5331.1453.
Borowiak M., Fischer J., Hammerl J.A., Hendriksen R.S., Szabo I., Malorny B. (2017). Identification of a novel transposon-associated phosphoethanolamine transferase gene, mcr-5, conferring colistin resistance in d-tartrate fermenting Salmonella enterica subsp. enterica serovar Paratyphi B, J Antimicrob Chemother. 72(12):3317-3324. doi: 10.1093/jac/dkx327.
Breijyeh Z., Jubeh B. & Karaman R. (2020). Resistance of gram-negative bacteria to current antibacterial agents and approaches to resolve it. Molecules: 25(6): 1340. doi.org/10.3390/molecules25061340
CLSI, M100 Performance Standards for Antimicrobial susceptibility testing, 31st edition. (2021). doi: 10.1007/978-3-662-48986-4_300418.
Dang P.K. Saegerman C., Douny C., Ton V.D., Bo H.X., Binh D.V., Ngan P.H. & Scippo M.L. (2013). First survey on the use of antibiotics in pig and poultry production in the Red River Delta region of Vietnam. Food and Public Health. 3(5): 247-256. doi:10.5923/j.fph.20130305.03.
Duong T.Q.T, Hounmanou Y.M.G., Son T.T.D., Olsen J.E., Giang T.H.T., Nhat T.T., Scheutz F. & Dalsgaard A. (2021). Genetic comparison of esbl-producing Escherichia coli from workers and pigs at vietnamese pig farms, Antibiotics (Basel). 25;10(10):1165. doi: 10.3390/antibiotics10101165.
Falagas ME, Kasiakou SK. Colistin: the revival of polymyxins for the management of multidrug-resistant gram-negative bacterial infections. Clin Infect Dis 2005;40:1333-41.
Hinenoya A., Ha N.C., Ngu N.T., Yamasaki S., Hassan J., Awasthi S.P., Phuong H.H., Suong T.T., Duy L.N.D, Yamamoto Y. & Sumimura Y. (2018). Isolation and molecular characterization of extended-spectrum β-lactamase producing Escherichia coli from industrial food animals in Mekong Delta, Vietnam, Japanese journal of veterinary research. 66(1): 1-12, doi: 10.14943/jjvr.66.1.1
Hounmanou Y.M.G. Bortolaia V., Son D.T.T., Duong T.Q., Olsen J.E. & Dalsgaard A. (2021). ESBL and AmpC β-lactamase encoding genes in E. coli from pig and pig farm workers in Vietnam and their association with mobile genetic elements. Front Microbiol. 11:12:629139. doi: 10.3389/fmicb.2021.629139.
Kallau N.H.G., Wibawan I.W.T., Lukman D.W. & Sudarwanto M.B. (2018). Detection of multi-drug resistant (MDR) Escherichia coli and tet gene prevalence at a pig farm in Kupang, Indonesia, J Adv Vet Anim Res. 5(4): 388-396. doi: 10.5455/javar.2018.e289.
Kawahara R., Diep T.K., Ha V.L., Quang N.P., Thang N.N., Yamaguchi T., Kumeda Y. & Yamamoto Y. (2019). Prevalence of mcr- 1 among cefotaxime-resistant commensal Escherichia coli in residents of Vietnam, Infect Drug Resist. 23:12:3317-3325. doi: 10.2147/IDR.S224545.
Kim S., Woo J.H., Kim N., Kim M.H., Kim S.Y., Son J.H., Moon D.C., Lim S.K., Shin M. & Lee J.C. (2019). Characterization of chromosome-mediated colistin resistance in Escherichia coli isolates from livestock in Korea, Infect Drug Resist; 12: 3291–3299. doi: 10.2147/IDR.S225383.
Liu YY, Wang Y, Walsh TR, Yi LX, Zhang R, Spencer J, Doi Y, Tian G, Dong B, Huang X, Yu LF, Gu D, Ren H, Chen X, Lv L, He D, Zhou H, Liang Z, Liu JH, Shen J., (2016). Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study. Lancet Infect Dis. 2016 Feb;16(2):161-8.
Luo Q., Wang Y. & Xiao Y. (2020). Prevalence and transmission of mobilized colistin resistance (mcr) gene in bacteria common to animals and humans. Biosafety and Health: 2(2): 71-78. doi.org/10.1016/j.bsheal.2020.05.001.
Lê Thị Nga, Hoàng Hoài Phương, Bùi Thị Kiều Anh, Lê Thị Hiên, Ngô Thanh Phong, Trần Nguyễn Minh Đoan, Huỳnh Thị Kim Phấn, Lê Thị Hảo, (2021). Tỷ lệ vi khuẩn Escherichia coli có mang gen đề kháng colistin phân lập từ thịt heo và người bán thịt heo sống tại Thành phố Hồ Chí Minh. Tạp chí y học dự phòng. 31(7): 25-32. doi.org/10.51403/0868-2836/2021/395
Nguyen D.P., Nguyen T., Le T.H., Tran N., Ngo T.P., Dang V., Kawai T., Kanki, M., Kawahara R., Jinnai M., Yonogi S., Hirai Y., Yamamoto Y. and Kumeda Y. (2016). Dissemination of extended-spectrum β-lactamase-and AmpC β-lactamase-producing Escherichia coli within the food distribution system of Ho Chi Minh City, Vietnam, BioMed Res. Int., 9. doi: 10.1155/2016/8182096
Son D.T.T, Duong T.T.Q., Olsen J.E., Nhat T.T., Giang T.H.T, Hue T.K.V & Dalsgaard A. (2021). Research note: Occurrence of mcr- encoded colistin resistance in Escherichia coli from pigs and pig farm workers in Vietnam, FEMS Microbes. 1(1). doi.org/10.1093/femsmc/xtaa003
Tada T., Nhung P.H., Shimada K., Tsuchiya M., Phuong D.M., Anh N.Q., Ohmagari N. & Kirikae T. (2017). Emergence of colistin-resistant Escherichia coli clinical isolates harboring mcr-1 in Vietnam, Int. J. Infect. Dis. 63: 72-73. doi: 10.1016/j.ijid.2017.07.003.
Trung N.V., Matamoros S., Carrique-Mas J.J., Nghia N.H., Nhung N.T., Chieu T.T.B., Mai H.H., van Rooijen W., Campbell J., Wagenaar J.A., Hardon A., Mai N.T.N., Hieu T.Q., Thwaites G., de Jong M.D., Schultsz C. & Hoa N.T. (2017). Zoonotic Transmission of mcr-1 colistin resistance gene from small-scale poultry farms, Vietnam, Emerg Infect Dis. 23(3): 529-532. doi: 10.3201/eid2303.161553.
Trương Thị Quý Dương, Trần Thị Nhật, Trương Thị Hương Giang, John Elmerdahl Olsen, Mahuton Gildas Hounmanou, Anders Dalsgaard, Đặng Thị Thanh Sơn (2021). Kết quả nghiên cứu kiểu hình và kiểu gen kháng kháng sinh của vi khuẩn E. coli sản sinh ESBL phân lập từ chất thải lợn. Tạp chí khoa học kỹ thuật thú y. 28(2).
Tuo H., Yang Y., Tao X., Liu D., Li Y., Xie X., Li P., Gu J., Kong L., Xiang R., Lei C., Wang H. & Zhang A. (2018). The prevalence of colistin resistant strains and antibiotic resistance gene profiles in Funan river, China. Front Microbiol.
: 3094. doi: 10.3389/fmicb.2018.03094.
Ueda S., Ngan B.T.K, Huong B.T.T, Hirai I., Tuyen L., Yamamoto Y. (2015). Limited transmission of blaCTX-M-9-type-positive Escherichia coli between humans and poultry in Vietnam, Antimicrobial agents and chemotherapy. 59: 3574-3577. doi:10.1128/AAC.00517-15.
Yamaguchi T., Kawahara R., Hamamoto K., Hirai I., Khong D. T., Nguyen T. N., Tran H., Motooka D., Nakamura S. & Yamamoto Y. (2020). High prevalence of colistin-resistant Escherichia coli with chromosomally carried mcr-1 in healthy
residents in Vietnam, mSphere: 5(2). doi.org/10.1128/msphere.00117-20