Analysis of S1 Gene Sequence of Infectious Bronchitis Virus Isolated From Chickens in Ba Vi, Ha Noi in 2014

Date Received: 28-08-2017

Date Accepted: 25-10-2017

Date Published: 06-08-2025

##submissions.doi##: https://doi.org/10.31817/tckhnnvn.2017.15.8.

Views

0

Downloads

0

Issue: Vol. 15 No. 8 (2017)

Section:

CHĂN NUÔI – THÚ Y – THỦY SẢN

How to Cite:

Loan, N., Bac, L., Huong, L., Huong, L., Thai, T., & Phan, L. (2025). Analysis of S1 Gene Sequence of Infectious Bronchitis Virus Isolated From Chickens in Ba Vi, Ha Noi in 2014. Vietnam Journal of Agricultural Sciences, 15(8), 1002–1013. https://doi.org/10.31817/tckhnnvn.2017.15.8.

Analysis of S1 Gene Sequence of Infectious Bronchitis Virus Isolated From Chickens in Ba Vi, Ha Noi in 2014

Nguyen Thi Loan , Le Tran Bac , Lai Thi Lan Huong , Le Huynh Thanh Huong , Than Van Thai , Le Van Phan (*)

  • Tác giả liên hệ: [email protected]

    • Keywords

    Infectious bronchitis virus, S1 gen, Q1-like

    Abstract


    Characterization of  S1 gene indicated the genetic diversity of the worldwide circulating infectious bronchitis virus (IBV) with variation of novel isolates. In this study, a IBV strain, named ck/VN/ VNUA-HN01/2014 (VNUA-HN01), was isolated from  a IBV outbreak in Ba Vi, Ha Noi  that occured in 2014 and its S1 gen was sequenced and analyzed to better understand  the origin and genetic composition. Phylogenetic analysis indicated that the VNUA-HN01 strain  is the Q1-like IBV variant. The S1 gene of   the VNUA-HN01 strain showed high  homology to the reference strains, ranging from 99.6 - 99.8% at the nucleotide level and 99.3 - 100% at the amino  acid level. In contrast, the VNUA-HN01 strain  shared low sequence homology  with  the vaccine strains (IB 4/91 and Ma5), ranging  from 72.6 - 75% and 71.2 - 73.2% at the nucleotide level  and the amino acid level, respectively.

    References

    Adams, M.J., Lefkowitz, E.J., King, A.M., Harrach, B., Harrison, R.L., Knowles, N.J., Kropinski, A.M., Krupovic, M., Kuhn, J.H., Mushegian, A.R., Nibert, M., Sabanadzovic, S., Sanfacon, H., Siddell, S.G., Simmonds, P., Varsani, A., Zerbini, F.M., Gorbalenya, A.E. and Davison, A.J. (2016). Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses. Arch. Virol., 161: 2921-49.

    Bande, F., Arshad, S.S., Omar, A.R., Bejo, M.H., Abubakar, M.S., Abba, Y. (2016). Pathogenesis and Diagnostic Approaches of Avian Infectious Bronchitis. Adv. Virol., 4621659.

    Bich, T.N., Khanh, N.P., Dung, P.H., Loan, N.T.C. (2017). Molecular characterization of infectious bronchitis virus (IBV) isolated from commercial chicken farms. Can Tho University Journal of Science, 6: 56-62.

    Cavanagh, D. (1983). Coronavirus IBV: further evidence that the surface projections are associated with two glycopolypeptides. J. Gen. Virol., 64: 1787-1791.

    Cavanagh, D. (2007). Coronavirus avian infectious bronchitis virus. Vet. Res., 38: 281-297.

    Cavanagh, D. and Davis, P.J. (1986). Coronavirus IBV: removal of spike glycopolypeptide S1 by urea abolishes infectivity and haemagglutination but not attachment to cells. J. Gen. Virol., 67: 1443-1448.

    Cavanagh, D., Davis, P.J., Cook, J.K., Li, D., Kant, A. and Koch, G. (1992). Location of the amino acid differences in the S1 spike glycoprotein subunit of closely related serotypes of infectious bronchitis virus. Avian. Pathol., 21: 33-43.

    Cavanagh, D. and Naqi, S. (2003). Infectious bronchitis. Diseases. of. Poultry, 11: 101-119.

    Cook, J.K., Jackwood, M. and Jones, R.C. (2012). The long view: 40 years of infectious bronchitis research. Avian. Pathol., 41: 239-250.

    Fellahi, S., Harrak, M.E., Ducatez, M., Loutfi, C., Koraichi, S.S., Kuhn, S.H., Khayi, S., Houadfi, M.D. (2015). Phylogenetic analysis of avian infectious bronchitis virus S1 glycoprotein regions reveals emergence of a new genotype in Moroccan broiler chicken flocks. Virol. J., 12: 116.

    Feng, J., Hu, Y., Ma, Z., Yu, Q., Zhao, J., Liu, X. and Zhang, G. (2012). Virulent avian infectious bronchitis virus, People's Republic of China. Emerg. Infect. Dis., 18: 1994-2001.

    Feng, K., Xue, Y., Wang, F., Chen, F., Shu, D. and Xie, Q. (2014). Analysis of S1 gene of avian infectious bronchitis virus isolated in southern China during 2011-2012. Virus. Genes., 49: 292-303.

    Hall, T.A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids. Symp. Ser., 41: 95-98.

    Hodgson, T., Britton, P. and Cavanagh, D. (2006). Neither the RNA nor the proteins of open reading frames 3a and 3b of the coronavirus infectious bronchitis virus are essential for replication. J. Virol., 80: 296-305.

    Huỳnh Thị Mỹ Lệ và Lê Văn Phan. (2014). Một số biểu hiện lâm sàng và kết quả chẩn đoán ổ dịch ở đàn vịt trời (Anas platyrhynchos). Khoa học kỹ thuật Thú y, 21: 59-67.

    Jackwood, M.W. (2012). Review of infectious bronchitis virus around the world. Avian. Dis., 56: 634-41.

    Kumar, S., Stecher, G. and Tamura, K. (2016). MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. Mol. Biol. Evol., 33: 1870-1874.

    Liu, S. and Kong, X. (2004). A new genotype of nephropathogenic infectious bronchitis virus circulating in vaccinated and non-vaccinated flocks

    in China. Avian. Pathol., 33: 321-327.

    Loan, N.T., Quyền, L.Đ., Quân, D.H., Thanh Phương, L.H., Hiên, N.B., Phan, L.V. (2016). Ứng dụng kỹ thuật RT-PCR để chẩn đoán bệnh viêm phế quản truyền nhiễm (infectious bronchitis) ở gà đẻ trứng tại một số tỉnh phía Bắc Việt Nam. Vietnam J. Agri. Sci., 14: 1387-1394.

    Pickett, B.E., Greer, D.S., Zhang, Y., Stewart, L., Zhou, L., Sun, G., Gu, Z., Kumar, S., Zaremba, S., Larsen, C.N., Jen, W., Klem, E.B., Scheuermann, R.H. (2012). Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community. Viruses, 4: 3209-3226.

    Promkuntod, N. (2016). Dynamics of avian coronavirus circulation in commercial and non-commercial birds in Asia-a review. Vet. Q., 36: 30-44.

    Trà An, V.T., Kim Yến, N.T., Dũng, H.H. (2012). Phân lập, định serotype virut viêm phế quản truyền nhiễm từ gà thịt. Khoa học kỹ thuật thú y, 19: 5-9.

    Valastro, V., Holmes, E.C., Britton, P., Fusaro, A., Jackwood, M.W., Cattoli, G., Monne, I. (2016). S1 gene-based phylogeny of infectious bronchitis virus: An attempt to harmonize virus classification. Infect Genet Evol., 39: 349-364.

    Yan, F., Zhao, Y., Yue, W., Yao, J., Lihua, L., Ji, W., Li, X., Liu, F., Wu, Q. (2011). A Phylogenetic analysis of S1 gene of infectious bronchitis virus isolates from China. Avian Dis., 55: 451-458.